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@EpistasisLab Epistasis Lab at Cedars Sinai

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    80 repositories

    • StarBASE-GP

      Public
      Python
      •
      GNU General Public License v3.0
      •1•4•1•1•Updated Mar 30, 2026Mar 30, 2026

    • ADSP_ADTF

      Public
      0•0•0•0•Updated Jan 20, 2026Jan 20, 2026

    • ADSP_Network_Score

      Public
      0•0•0•0•Updated Sep 26, 2025Sep 26, 2025

    • SynTwin

      Public
      SynTwin: A graph-based approach for predicting clinical outcomes using digital twins derived from synthetic patients
      Jupyter Notebook
      •1•1•0•0•Updated Sep 24, 2025Sep 24, 2025

    • tpot

      Public
      A Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.
      pythondata-sciencemachine-learning
      pythondata-sciencemachine-learningautomationrandom-forestscikit-learnaimlmodel-selectionhyperparameter-optimizationfeature-engineering
      Jupyter Notebook
      •
      GNU Lesser General Public License v3.0
      •1.6k•10k•297•12•Updated Sep 11, 2025Sep 11, 2025

    • scikit-mdr

      Public
      A sklearn-compatible Python implementation of Multifactor Dimensionality Reduction (MDR) for feature construction.
      Python
      •
      MIT License
      •24•126•11•0•Updated Jun 10, 2025Jun 10, 2025

    • escargot

      Public
      Python
      •
      MIT License
      •7•35•5•0•Updated Jun 2, 2025Jun 2, 2025

    • AddictionKB

      Public
      A knowledge base for AI research in addiction
      aimlknowledge-graphaddiction
      aimlknowledge-graphaddictionautomlnlmaidssubstance-use-disorder
      Python
      •0•2•0•0•Updated Apr 2, 2025Apr 2, 2025

    • KRAGEN

      Public
      Software to implement GoT with a weviate vectorized database
      Python
      •
      MIT License
      •44•683•18•0•Updated Mar 25, 2025Mar 25, 2025

    • pmlbr

      Public
      pmlb is an R interface to the Penn Machine Learning Benchmarks data repository
      R
      •
      Other
      •2•10•0•0•Updated Mar 11, 2025Mar 11, 2025

    • pmlb

      Public
      PMLB: A large, curated repository of benchmark datasets for evaluating supervised machine learning algorithms.
      Python
      •
      MIT License
      •142•862•20•0•Updated Feb 25, 2025Feb 25, 2025

    • tpot2

      Public
      A Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.
      pythondata-sciencemachine-learning
      pythondata-sciencemachine-learningautomationrandom-forestscikit-learnaimlmodel-selectionhyperparameter-optimizationfeature-engineering
      Jupyter Notebook
      •
      GNU Lesser General Public License v3.0
      •32•250•52•2•Updated Feb 4, 2025Feb 4, 2025

    • PAGER

      Public
      PAGER is an efficient genotype encoding strategy designed to improve the detection of non-additive genetic variation in complex trait association studies. PAGER…
      encodinggwasgenetics
      encodinggwasgeneticsepistasisadditive-modelsheterosisgenetic-interactionsdominance-analysisgenotype-to-phenotypenon-additive-effects
      Python
      •1•3•0•0•Updated Jan 3, 2025Jan 3, 2025

    • Aliro

      Public
      Aliro: AI-Driven Data Science
      aimlalzheimers-diseaseautoml
      aimlalzheimers-diseaseautomlalzheimeralzheimersniaadspag066833u01ag066833
      JavaScript
      •
      GNU General Public License v3.0
      •60•237•58•31•Updated Oct 7, 2024Oct 7, 2024

    • AlzKB

      Public
      aimlalzheimers-diseaseautoml
      aimlalzheimers-diseaseautomlalzheimeralzheimersniaadspag066833u01ag066833
      Python
      •2•24•0•0•Updated Sep 3, 2024Sep 3, 2024

    • latent_phenotype_project

      Public
      Python
      •
      MIT License
      •0•2•0•0•Updated Aug 9, 2024Aug 9, 2024

    • PSB25_ADSP_GIG

      Public
      0•0•0•0•Updated Aug 1, 2024Aug 1, 2024

    • AlzKB-updates

      Public
      Jupyter Notebook
      •0•1•0•0•Updated Jul 23, 2024Jul 23, 2024

    • STAR_outliers

      Public
      Python
      •
      MIT License
      •1•1•1•0•Updated May 18, 2024May 18, 2024

    • tpot2_imputetest

      Public
      Testing complex imputation methods on a Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.
      Jupyter Notebook
      •
      GNU Lesser General Public License v3.0
      •32•1•0•0•Updated May 1, 2024May 1, 2024

    • tpot2-feedstock

      Public
      A conda-smithy repository for tpot2.
      BSD 3-Clause "New" or "Revised" License
      •4•0•0•0•Updated Apr 24, 2024Apr 24, 2024

    • GPT4_and_Review

      Public
      Using GPT-4 to write a scientific review article: a pilot evaluation study
      Python
      •0•4•0•0•Updated Apr 10, 2024Apr 10, 2024

    • autoqtl

      Public
      Automated Quantitative Trait Locus Analysis (AutoQTL)
      Python
      •
      GNU General Public License v3.0
      •3•10•0•0•Updated Mar 5, 2024Mar 5, 2024

    • epistasis_detection

      Public
      Implementation of an efficient algorithm to compute linear regression models for epistasis that permit varied genetic encodings (penetrance functions) of the in…
      Jupyter Notebook
      •1•2•0•0•Updated Feb 29, 2024Feb 29, 2024

    • EBIC.jl

      Public
      EBIC - a biclustering algorithm in Julia
      Julia
      •
      MIT License
      •0•7•0•0•Updated Jan 24, 2024Jan 24, 2024

    • aliroed-pi-gen

      Public
      Tool used to create the AliroEd Raspberry Pi OS images
      Shell
      •
      BSD 3-Clause "New" or "Revised" License
      •1.8k•0•0•0•Updated Jan 11, 2024Jan 11, 2024

    • PSB2024_spine

      Public
      Python
      •0•0•0•0•Updated Sep 25, 2023Sep 25, 2023

    • tpot2_gptp_experiments

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jul 31, 2023Jul 31, 2023

    • tpot2-test

      Public
      A Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.
      Jupyter Notebook
      •
      GNU Lesser General Public License v3.0
      •32•0•0•0•Updated May 31, 2023May 31, 2023

    • STAR_outliers_figure_and_table_generation

      Public
      Python
      •0•0•0•0•Updated Apr 14, 2023Apr 14, 2023
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