Systems and Synthetic Biology at Chalmers University of Technology
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107 repositories
Human-GEM
PublicThe generic genome-scale metabolic model of Homo sapiensGECKO
PublicToolbox for including enzyme constraints on a genome-scale model.RAVEN
PublicThe RAVEN Toolbox for genome scale model reconstruction, curation and analysis.overflow
PublicSupplementary code and results from doi:10.1101/2020.02.20.957662yeast-GEM
PublicThe consensus GEM for Saccharomyces cerevisiaeEcoli-GEM
PublicGenome-scale metabolic model for Escherichia coliDiversifyCodons
Publicsint-GEM
PublicGenome-scale metabolic model of Sungouiella intermediasce-crabtree-neg-study
Publicsysbio.se
PublicOrthoBenchmark
PublicecFactory
PublicA constraint-based method for prediction of metabolic engineering targets using ecModels of metabolismCellFactory-ecYeastGEM
PublicCode and data for in silico strain design for enhanced production of +100 typical bio-products with yeast as a cell-factory. Predictions are based on the ecYeas…GAGome-BCa
PublicYarrowia_Multifactor
PublicBrainMetabolismModeling
Publichanpo-GEM
PublicGEMsforTrophicLevels
PublicWorm-GEM
PublicGenome-scale model for Caenorhabditis elegansFruitfly-GEM
PublicGenome scale model for Drosophila melanogasterZebrafish-GEM
PublicGenome-scale model for Danio rerioRat-GEM
PublicGenome-scale model for Rattus norvegicusMouse-GEM
PublicGenome-scale model for Mus musculusTMEModeling
PublicHuman-GEM-guide
PublicpcSecYeast
Public- KMG060 Systems Biology course - repo for students
sybil
Publicsybil-SBML
PublicDLKcat
PublicDeep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic models (ecGEMs) reconstru…
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